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UNITED STATES
SECURITIES AND EXCHANGE COMMISSION
Washington, D.C. 20549
SCHEDULE 13D-A
Under the Securities Exchange Act of 1934
(Amendment No. 1 )*
(Name of Issuer)
(Title of Class of Securities)
(CUSIP Number)
Christian G. Cabou
Senior Vice President and General Counsel
Illumina, Inc.
9885 Towne Centre Drive
San Diego, CA 92121
(858) 202-4500
(Name, Address and Telephone Number of Person Authorized to
Receive Notices and Communications)
(Date of Event Which Requires Filing of this Statement)
If the filing person has previously filed a statement on Schedule 13G to report the acquisition that is the subject of this Schedule 13D, and is filing this schedule because of §§240.13d-1(e), 240.13d-1(f) or 240.13d-1(g), check the following box. o
Note: Schedules filed in paper format shall include a signed original and five copies of the schedule, including all exhibits. See §240.13d-7 for other parties to whom copies are to be sent.
* The remainder of this cover page shall be filled out for a reporting persons initial filing on this form with respect to the subject class of securities, and for any subsequent amendment containing information which would alter disclosures provided in a prior cover page.
The information required on the remainder of this cover page shall not be deemed to be filed for the purpose of Section 18 of the Securities Exchange Act of 1934 (Act) or otherwise subject to the liabilities of that section of the Act but shall be subject to all other provisions of the Act (however, see the Notes).
Persons who respond to the collection of information contained in this form are not required to respond unless the form displays a currently valid OMB control number.
Item 1. Security and Issuer
This Amendment No. 1 to the initial Statement on Schedule 13D relates to the common stock, par
value $0.01 per share (the Common Stock), of Solexa, Inc., a Delaware corporation (the Issuer
or Solexa). The address of the principal executive offices of the Issuer is 25861 Industrial
Boulevard, Hayward, California 94545.
Item 3. Source and Amount of Funds or Other Consideration
On January 26, 2007, Solexa became a direct wholly-owned subsidiary of Illumina, Inc., a
Delaware corporation (Illumina), upon the consummation of the merger (the Merger) of Callisto
Acquisition Corp., a Delaware corporation and direct wholly-owned subsidiary of Illumina (Merger
Sub), with and into Solexa, as contemplated by the Agreement and Plan of Merger, dated as of
November 12, 2006 (the Merger Agreement), among Illumina, Merger Sub and Solexa.
Pursuant to the Merger Agreement, each share of Common Stock outstanding immediately prior to
the Effective Time (as defined in the Merger Agreement) was converted into the right to receive
0.344 of a share of common stock, par value $0.01 per share, of Illumina, and each share of Solexa
Common Stock ceased to be outstanding and was canceled and retired and ceased to exist. Each issued
and outstanding share of common stock of Merger Sub (which consists of 1,000 shares, all of which
are owned by Illumina) was converted into and became one share of common stock of the surviving
corporation, Solexa.
Item 4. Purpose of Transaction
(a)-(b) As described in Item 3 above, this Statement relates to the Merger of Merger Sub with
and into Solexa in a statutory merger pursuant to the Delaware General Corporation Law and the
Merger Agreement. Upon consummation of the Merger, the separate existence of Merger Sub ceased, and
Solexa became a direct wholly owned subsidiary of Illumina. Holders of outstanding Solexa Common
Stock received the consideration specified in Item 3 in exchange for each share of Solexa Common
Stock held by them. Each share of issued and outstanding common stock of Merger Sub, all of which
are owned by Illumina, was converted into and became one share of common stock of the surviving
corporation, Solexa.
(c) Not applicable.
(d) Upon consummation of the Merger, the directors and officers of Merger Sub immediately prior to
the Merger became the directors and officers of Solexa.
(e) Other than as a result of the Merger described in Item 3 above, not applicable.
(f) Not applicable.
(g) At the Effective Time of the Merger, the Certificate of Incorporation of Solexa was amended and
restated in its entirety to read identically to the Certificate of Incorporation of Merger Sub in
effect immediately prior to the Effective Time, provided that Article I was amended to read The
name of the Corporation is Solexa, Inc. The Bylaws of Merger Sub in effect immediately prior to
the Effective Time became the Bylaws of Solexa.
(h)-(i) Upon consummation of the Merger, Solexa Common Stock was delisted from the Nasdaq stock
market and a Form 15 was filed with the Securities and Exchange Commission seeking termination of
its registration.
(j) Not applicable.
Item 5. Interest in Securities of the Issuer
(a) Following the Effective Time of the Merger, Illumina is the beneficial owner of 1,000 shares of
common stock of Solexa, representing 100% of the outstanding common stock.
(b) Number of shares as to which Illumina has:
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(i) sole power to vote or direct the vote: see line 7 of the cover sheet.
(ii) shared power to vote or to direct the vote: see line 8 of the cover sheet.
(iii) sole power to dispose or to direct the disposition: see line 9 of the cover sheet.
(iv) shared power to dispose or to direct the disposition: see line 10 of the cover sheet.
(c) Pursuant to the terms of the Merger Agreement, at the Effective Time, all Solexa Common Stock
outstanding prior to the Effective Time owned by Illumina was canceled pursuant to Section 3.1(b)
of the Merger Agreement. As a result, Illumina canceled the 5,154,639 shares of Solexa Common Stock
it owned at the Effective Time. As described in Item 3, the 1,000 shares of Merger Sub common stock
owned by Illumina became the issued and outstanding common stock of Solexa following the
consummation of the Merger. No other transactions in Solexa Common Stock were effected by Illumina
during the 60 days preceding the date of this Statement.
(d) Not applicable.
(e) Not applicable.
Item 6. Contracts, Arrangements, Understandings or Relationships with Respect to Securities of
the Issuer
Other than as described elsewhere in this Statement and as previously reported, Illumina has
no understandings, arrangements, relationships or contracts relating to Solexa Common Stock which
are required to be described hereunder.
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